PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 414aa    MW: 45860 Da    PI: 8.0839
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601310.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.74.2e-2033122186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W ++e+ aL++a+++++ +lrrg+l++++W++v++++      +g  +s++qC++k+e+l+kry+ +k+++ +r  + ss++ +f  l+
  XP_013601310.1  33 CWNDEETAALVNAYKDKWFALRRGNLRAADWDDVAAAVsslhTLGGPAKSAIQCRHKIEKLRKRYRGEKQRSLNRPGKFSSSWDLFPILD 122
                     7*************************************888777889****************************9999*******9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-2032124No hitNo description
SMARTSM005950.009741129IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MSTPDGSPVA MAVDPSTAVT VATTTTRRVP PPCWNDEETA ALVNAYKDKW FALRRGNLRA  60
ADWDDVAAAV SSLHTLGGPA KSAIQCRHKI EKLRKRYRGE KQRSLNRPGK FSSSWDLFPI  120
LDAMEFAPVT PTAVEPYDPD LDNDDESNGL DGFRVRSKRS GKFDSPRDGF GVRSRSKSQM  180
KMYGGFDSDH DSGGGFGLKR RYNGNPKVSG DFDADSDDEI VLVPKATRLK GSHGKPSSGE  240
FGGGFPLKSF GDRSFASHGF KAKNFSKPEA NFSPEMDYDD EFDEGFNPRI QHSRSSSRAN  300
GYGRKDGSYP RNNNTGVSNG YGSSSRFKHE QMNAAADVES DPIDEVVSSV KMLTEMFVRV  360
ENSKMEMMRE MEKTRMEMEL KHCQMMLESQ QQIIGAFAEA LSEKKSTNAR RPGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325680.0AC232568.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH122A22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013671351.10.0PREDICTED: uncharacterized protein LOC106375884 isoform X3
RefseqXP_013671350.10.0PREDICTED: uncharacterized protein LOC106375884 isoform X2
RefseqXP_013671349.10.0PREDICTED: uncharacterized protein LOC106375884 isoform X1
RefseqXP_013601310.10.0PREDICTED: uncharacterized protein LOC106308728
TrEMBLA0A078HCS50.0A0A078HCS5_BRANA; BnaC01g21240D protein
TrEMBLA0A0D3A7F00.0A0A0D3A7F0_BRAOL; Uncharacterized protein
STRINGBra040110.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104831828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-21Trihelix family protein